Spack: A Flexible Package Manager for HPC Software
Large-scale supercomputer simulations—often containing millions of lines of code—rely on hundreds of external software libraries, or packages. Users of the same high performance computing (HPC) system frequently need different versions and configurations of these packages to test the performance and compatibility of their code. Efficient packaging tools are critical in HPC environments, but traditional package managers are limiting because they cannot manage simultaneous installations of multiple versions and configurations. Consequently, users, developers, and HPC support staff spend many hours building codes and libraries by hand.
After many hours building software on Lawrence Livermore’s supercomputers, in 2013 Todd Gamblin created the first prototype of a package manager he named Spack (Supercomputer PACKage manager). The tool caught on, and development became a grassroots effort as colleagues began to use the tool. The Spack team now includes Livermore computer scientists Gregory Becker, Kiel Friedt, Greg Lee, Matthew LeGendre, Adam Moody, and Peter Scheibel, along with contributions from two dozen other employees.
Spack is now a flexible, configurable, Python-based HPC package manager, automating the installation and fine-tuning of simulations and libraries. It operates on a wide variety of HPC platforms and enables users to build many code configurations. Software installed by Spack runs correctly regardless of environment, and file management is streamlined. Unlike typical package managers, Spack can install many variants of the same build using different compilers, options, and Message Passing Interface (MPI) implementations.
Moreover, writing package recipes for Spack is very simple. A single file contains a templated recipe for different builds of the same package, and recipe authors can differentiate between versions using a custom specification language developed by Gamblin. Behind the scenes, Spack handles the complexity of connecting each software package with a consistent set of dependencies. Each software’s dependency graph—showing the packages it relies on to function—is a unique configuration, and Spack installs each of those configurations in a unique directory, enabling configurations of the same package to run on the same machine. Spack uses RPATH linking so that each package knows where to find its dependencies.
By ensuring one configuration of each library per dependency graph, Spack guarantees that the interface between program modules (the application binary interface, or ABI) remains consistent. Users do not need to know dependency graph structure—only the dependency names. In addition, dependencies may be optional; concretization, a generalization technique, fills in missing configuration details when the user is not specific enough, based on user/site preferences.
Various Livermore code teams are now making use of Spack. For instance, Spack was used to successfully automate software builds for ARES, a large radiation hydrodynamics code with more than 40 dependency libraries. At Livermore, ARES runs on commodity Linux clusters and on Blue Gene/Q. Spack has reduced the time to deploy ARES on new machines from weeks to a few days. The ARES team can build many different versions of their code and pilot new configurations before deploying to production, allowing them to catch compiler incompatibilities and fix bugs before users are affected.
Figure 1. Dependency graph of one configuration of ARES, a Livermore-developed hydrodynamics code with four types of packages. Spack enables four versions to be built nightly across multiple environments. (Click to enlarge.)
The Livermore team realized early on that Spack’s usefulness extended beyond the Laboratory. Other HPC centers also spend considerable time deploying software, and application developers leverage the same open-source software, such as math libraries, graphical user interface toolkits, simulation frameworks, compilers, and MPI implementations. The challenge for HPC users is to tune the build for exotic HPC hardware. “It makes sense to share the cost of building and configuration across the community,” Gamblin says.
Spack was released as an open-source project in 2014, and Gamblin presented it at the Supercomputing 2015 conference. Outside collaborators began to contribute rapidly, growing the number of packages from 300 to more than 1,100 in just one year. Today, three out of four Spack packages are contributed by outside institutions, both domestic and international. For each institution to maintain these packages separately would have been unsustainable; with Spack, each site benefits from the efforts of others.
The Livermore team leveraged this interest at the Supercomputing 2016 conference. The Spack team, along with international colleagues, presented a “Spack 101” tutorial to several dozen attendees. “We met many collaborators and users face-to-face for the first time,” says Gamblin. “Interacting with them in person gave us a much better sense of the needs of the larger Spack community.” The tutorial is now available as part of Spack’s documentation, and it has been presented by enthusiasts at Lawrence Berkeley’s National Energy Research Supercomputing Center (NERSC) and the National Aeronautics and Space Administration. Spack is also used at Argonne National Laboratory in Chicago and École Polytechnique Fédérale de Lausanne in Switzerland, and it is gaining traction at other universities and national laboratories.
For Gamblin, Spack’s rapid growth was a surprise, but the project team’s efforts to grow the community made it possible. “Other tools in this space are aimed mainly at HPC facility staff. Spack is popular with users and application developers as well,” he says. His team wrote documentation for easy onboarding and is open to contributions that extend Spack’s capabilities beyond Livermore’s Linux and IBM machines. “We’ve accepted patches that allowed Spack to work on Mac laptops, and we worked extensively with NERSC to support Cray machines,” Gamblin says, noting that all the largest HPC centers in the Department of Energy (DOE) complex now use Spack.
As Livermore moves toward exascale computing, automated package management will help future ecosystems operate reliably. “We aim for Spack to automate deployment of Exascale Computing Project applications across the DOE,” says Gamblin. “Spack allows developers to easily leverage the millions of lines of code that others have written.”
The Laboratory’s efforts to support Spack as an open-source project have paid off many times over. Each week, the Spack team incorporates 30 to 50 changes from outside users. Frequently, the Livermore team benefits from a long-desired feature submission or a solution to a problem already debugged by others. “We receive more contributions than we put in, which relieves the burden of building everything ourselves and allows us to build much more complex packages,” Gamblin explains. “Without the open-source community, we wouldn’t be able to sustain Spack.”
Figure 2. External contributions to Spack increased rapidly after its open-source release in 2014. By 2015, three of four package recipes were contributed by collaborators. (Click to enlarge.)
For More Information
Join the Spack community by visiting its repository: Spack on GitHub